PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518770.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 386aa    MW: 42660.7 Da    PI: 8.3428
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.46.1e-39642042135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec..eaesssssasnsssg.... 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a  ai el+++  +++++ e   ++e+ ++++     +    
  XP_010518770.1  64 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnaTFPTEDERiaSSENVVVQNPI---Pnleq 155
                     689*************************************************************66333332222222222333322...13445 PP

             TCP  89 .kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                      ++ +++a+s++s++s++s l+l++ e r kar+rarert++++   ++
  XP_010518770.1 156 tASLSKSACSSNSDTSKNSGLSLSRsELRDKARERARERTAKEKESHTV 204
                     478888889999*************9************99887766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3865200IPR005333Transcription factor, TCP
PROSITE profilePS5136930.89666124IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.132181199IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDTEDIQMFP KFDRSGEEVI GDPMKKDGNN PKGNNGVVAA AGDGNRLSRW HHHSSRIIRV  60
SRASGGKDRH SKVWTSKGPR DRRVRLSVST ALQFYDLQDR LGYDQPSKAV EWLIKAAADA  120
IAELPSLNAT FPTEDERIAS SENVVVQNPI PNLEQTASLS KSACSSNSDT SKNSGLSLSR  180
SELRDKARER ARERTAKEKE SHTVNDNSHS HASFTELLTG SVHAESETGS VNPSRQWMHS  240
PAPMEYFNSG LFLGSGQAQF PIQTLSIPFS SISDQHHHHR HHHHPHRDIS FVPDHLISPG  300
GGGSFNLDFN ISSSAMAGFN GLNRGTLQSN SQNHQPFLGN LQRFSSDGAP FFIGALPVEN  360
HNXQHQFKLY YENGCRNPEH KGKGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2371125155Putative transcription factor PCF6
5zkt_B1e-2371125155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518770.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP2-like
SwissprotQ93V431e-139TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1J3EG291e-145A0A1J3EG29_NOCCA; Transcription factor TCP2
STRINGXP_010518770.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-117TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]