PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518740.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 356aa    MW: 39905.5 Da    PI: 8.267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.8e-26264345186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ e +aLi++r+e+ee++++g      W+e+s++mre+g++rs+k+Ckekwen+nk+y+k+ e  +++++e+s+tc yf++l+
  XP_010518740.1 264 RWPRAEMQALITIRSEVEEKVGKG----SIWDEISERMREKGYKRSAKKCKEKWENMNKYYRKVMEEGGRKRAEHSKTCCYFQELD 345
                     8********************998....89***************************************99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0011261319IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-4263317IPR009057Homeodomain-like
CDDcd122032.00E-23263323No hitNo description
PfamPF138371.6E-20263347No hitNo description
PROSITE profilePS500907.654264317IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELLAGDRRN LVTDDVDPLV GSEIGCGWIR ARPEGSNGGL ITLADLAPPP RKLRPIRYGD  60
RLPSEDQHPL DVLAGTLDQL PELGCFDAPL GAKIVDVEKR GDLARGFAKD HPGGVGSGTR  120
FGTGTACDGA SLSSSVDSDG GSGGIQAAAT IGKRKRKTRE KLQHFLEKLV GNMLKRQEKM  180
NEQLMEVIET KERERILREE AWKQQEMERM KRGEEVIAQE MARGSAIISL IQTVIGQETE  240
IPRPQPQNLP EQTPKLCDLN SSRRWPRAEM QALITIRSEV EEKVGKGSIW DEISERMREK  300
GYKRSAKKCK EKWENMNKYY RKVMEEGGRK RAEHSKTCCY FQELDSLYNK TAGDLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302310KRSAKKCKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518740.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLR0EUC71e-122R0EUC7_9BRAS; Uncharacterized protein
STRINGXP_010518740.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-118Trihelix family protein