PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518707.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 247aa    MW: 26689.8 Da    PI: 9.0578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-20129179255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  XP_010518707.1 129 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 179
                     8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.34E-30128187No hitNo description
Gene3DG3DSA:3.30.730.103.9E-32128187IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-23129189IPR016177DNA-binding domain
SMARTSM003804.2E-40129193IPR001471AP2/ERF domain
PfamPF008475.7E-14129179IPR001471AP2/ERF domain
PROSITE profilePS5103224.605129187IPR001471AP2/ERF domain
PRINTSPR003676.1E-11130141IPR001471AP2/ERF domain
PRINTSPR003676.1E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MCGDGEITAE SDYALLQSVR RHLLGDSSSA GKGTSGHTVR PVYGRTSSFS KLFPCFTDSW  60
GDLPLKENDS EDMLVYGILR DAFHGGWDPS PDVRSLLGDF SEVKIEPPEI VQLMPNTVPA  120
AEAPSKGKHY RGVRRRPWGK FAAEIRDPAK NGARVWLGTF ETAEDAALAY DRAAFRMRGS  180
RALLNFPLRV NSGEPEPVRV TTKRSSSSSG NVSSKRRRKA ESSPAVADGG LGYGDGGGED  240
RVRGGSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-43125194170ATERF1
3gcc_A7e-43125194170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518707.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518707.11e-180PREDICTED: ethylene-responsive transcription factor 1A
SwissprotO803375e-94EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A1J3DB411e-100A0A1J3DB41_NOCCA; Ethylene-responsive transcription factor 1A
STRINGXP_010518707.11e-180(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-83ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]