PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010518662.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 40246.3 Da PI: 7.435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +++ + G g+W++ ++ g++R++k+c++rw +yl XP_010518662.1 15 KGPWTPEEDQKLREYISKNGFGNWRSLPKFSGLNRCGKSCRLRWMNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E+ l+v+++ lG++ W++Ia++++ gRt++++k++w++++ XP_010518662.1 68 RGNFSHDEESLIVNLHSVLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.125 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.69E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.59 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MVRSPCCEEG KGVKKGPWTP EEDQKLREYI SKNGFGNWRS LPKFSGLNRC GKSCRLRWMN 60 YLRPEIRRGN FSHDEESLIV NLHSVLGNKW SKIASHLPGR TDNEIKNYWN THMRKKLLQM 120 GIDPNTHKPR TDLNQILGFS QLLAATNRQL SDNTLFANNN ALEDLLKVQL IHNILQILNP 180 KPLSNIGSLN TNAINLKPKP AEGPSKTVDP QIFTNPIGIT PQNNMKLRSS LGNLCGTNPN 240 RTEPMGTSGS WDILEENWLP DLVSISQENS ITKPVTTTGD DQTGRCIEPG FYAYVQFGEA 300 QSSVSGSPET AGLNQTETTQ LSSGPDAFEA WEKLLDDETR DSCWKSFLDL TSPNSPPVAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00438 | DAP | Transfer from AT4G17785 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010518662.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010518662.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q8GWP0 | 1e-132 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A178USW3 | 1e-131 | A0A178USW3_ARATH; MYB39 | ||||
STRING | XP_010518662.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12243 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17785.1 | 1e-135 | myb domain protein 39 |