PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518662.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 360aa    MW: 40246.3 Da    PI: 7.435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l +++ + G g+W++ ++  g++R++k+c++rw +yl
   XP_010518662.1 15 KGPWTPEEDQKLREYISKNGFGNWRSLPKFSGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding54.13.5e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E+ l+v+++  lG++ W++Ia++++ gRt++++k++w++++
   XP_010518662.1  68 RGNFSHDEESLIVNLHSVLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.1251066IPR017930Myb domain
SuperFamilySSF466897.11E-3212109IPR009057Homeodomain-like
SMARTSM007171.6E-151464IPR001005SANT/Myb domain
PfamPF002491.1E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231669IPR009057Homeodomain-like
CDDcd001675.69E-121762No hitNo description
PROSITE profilePS5129421.5967117IPR017930Myb domain
SMARTSM007172.6E-1567115IPR001005SANT/Myb domain
PfamPF002494.0E-1568112IPR001005SANT/Myb domain
CDDcd001673.06E-1170113No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVRSPCCEEG KGVKKGPWTP EEDQKLREYI SKNGFGNWRS LPKFSGLNRC GKSCRLRWMN  60
YLRPEIRRGN FSHDEESLIV NLHSVLGNKW SKIASHLPGR TDNEIKNYWN THMRKKLLQM  120
GIDPNTHKPR TDLNQILGFS QLLAATNRQL SDNTLFANNN ALEDLLKVQL IHNILQILNP  180
KPLSNIGSLN TNAINLKPKP AEGPSKTVDP QIFTNPIGIT PQNNMKLRSS LGNLCGTNPN  240
RTEPMGTSGS WDILEENWLP DLVSISQENS ITKPVTTTGD DQTGRCIEPG FYAYVQFGEA  300
QSSVSGSPET AGLNQTETTQ LSSGPDAFEA WEKLLDDETR DSCWKSFLDL TSPNSPPVAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28151177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518662.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518662.10.0PREDICTED: transcription factor MYB39
SwissprotQ8GWP01e-132MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A178USW31e-131A0A178USW3_ARATH; MYB39
STRINGXP_010518662.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.11e-135myb domain protein 39