PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG046885t1
Common NameTCM_046885
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family E2F/DP
Protein Properties Length: 426aa    MW: 47707.2 Da    PI: 5.2426
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG046885t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.91.3e-26151216171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++l+ ++++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  Thecc1EG046885t1 151 RYDSSLGLLTKKFVNLIMEAKDGTLDLNRTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 216
                       6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-28148217IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.45E-17151214IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.4E-35151216IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.3E-25153216IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.55E-42227338No hitNo description
SuperFamilySSF1440741.52E-30227337No hitNo description
PfamPF164211.4E-29232335IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MANSSEDPSR SYHPSQFQFQ LLHSHSQSLS IESNQNQNQP LSYGKRMFPA SLGRPPLLFS  60
SFDQTNARLD HAPSAFPTPP TKERESDEAQ TSGRSDVPGH GKVVNRPLLE PEHTKGGKHN  120
SKAKAKKNAK SGTQKQNADS PNGLNAAGNC RYDSSLGLLT KKFVNLIMEA KDGTLDLNRT  180
AEVLEVQKRR IYDITNVLEG IGLIEKTSKN HIRWKGSDDM GSKVLDDQVT RLKAEIQSLY  240
AEEQKLDEYI REKQESLRSL DEDKNYQKYL FLTEEDIMSL PCFQNQTVFA IKAPENTYIE  300
VPDPDEDIGF PQKPMQRQYK MIIRSHMGPI DLYLLSKYEG QVEDTTVKQA KSVDTSSSYG  360
LLCGVECPEL SSEEKASQNN SSKTVNLVCP EAYGIQKLIP TVSEADDDYW FLSDPGVSIT  420
DLWDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-24151216773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284607.10.0transcription factor E2FC isoform X2
TrEMBLA0A061FDM30.0A0A061FDM3_THECC; Winged-helix DNA-binding transcription factor family protein, putative
STRINGEOY150130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-103E2F/DP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]