PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG046723t1
Common NameTCM_046723
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 284aa    MW: 32363.7 Da    PI: 10.0132
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG046723t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.77.8e-08124200688
              FAR1   6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +A + G+ v+++ s k          t  C + g  +++ k+ ++ ++r++a+  t+C  +++ kk+ d++w +t  + eHnHe
  Thecc1EG046723t1 124 FALTQGYMVSIRDSAKD------RYVTVACDRGGVYRKRLKNgENMRQRKNASRLTNCPFEVVGKKD-DDVWTLTVKNGEHNHE 200
                       67777777777776666......567899*****999999885666777888999******988888.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-6123200IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
PWKNPLSPFF LCFFFLLSSH SYIHQISLHF TASTKTTPSP TVSPSRLFSF QRVFINHAPD  60
YSATVFFLSH ENHFNVLTLN VVSSELVDME VQDQNEHNQE KKMLPPTRGT FQSREELLKH  120
VRDFALTQGY MVSIRDSAKD RYVTVACDRG GVYRKRLKNG ENMRQRKNAS RLTNCPFEVV  180
GKKDDDVWTL TVKNGEHNHE PSNTSDHPSC RRFTEEEVLI IRDMSAAGKR PRQILKALSQ  240
RNPNLVSDSR NVYNVKAKIR RGSLSGEDIQ AKLALAFHAP TAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971559.10.0PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2 isoform X5
TrEMBLA0A061E3B50.0A0A061E3B5_THECC; Uncharacterized protein (Fragment)
STRINGEOX994500.0(Theobroma cacao)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]