PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG046193t1 | ||||||||
Common Name | TCM_046193 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 194aa MW: 22009.1 Da PI: 9.7704 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.5e-12 | 7 | 82 | 7 | 83 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 + d ++l++ kkf +e + +++ +t++de+g W++k++++ + + vl++ W +Fv+ n++++gD v ++ Thecc1EG046193t1 7 TIDGDDINQLTITKKFDAEAFPSAAGGGAMTVKDEQGSLWTFKYKVKLRNK-RVLSGHWVHFVRNNRVRVGDRVAIS 82 567778899*******6666444566779***************7644433.489*****************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.32 | 1 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.17E-12 | 3 | 77 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.2E-12 | 4 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-11 | 4 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-9 | 8 | 82 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAILEKTIDG DDINQLTITK KFDAEAFPSA AGGGAMTVKD EQGSLWTFKY KVKLRNKRVL 60 SGHWVHFVRN NRVRVGDRVA ISNNDGWSSE AEYKIELAAM ARIFEKYLTT QDKDEGLKIR 120 SGADLLPRVN ENLRVMDGKS KKVLVFEYQV SGRETPVIRG KQWKKFISRY NTGDTVTLYT 180 YQGCDAEYEI SVR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | S1SN06 | 1e-141 | S1SN06_THECC; Uncharacterized protein | ||||
STRING | EOY20529 | 1e-141 | (Theobroma cacao) |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG046193t1 |
Entrez Gene | 18507066 |
Publications ? help Back to Top | |||
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