PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG046144t1 | ||||||||
Common Name | TCM_046144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 20051 Da PI: 8.371 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.9 | 3.2e-12 | 4 | 97 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEE.EEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWe.vkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr. 87 f+k lt dv k+ + +p +f+++ +g +++ l ++d sg+ We + + +r+ ++ v+++ W+++v+an+Lk gD ++F+++++ Thecc1EG046144t1 4 FEKYLTEVDVKKQ--MAIPTDFMRHLpyyEGG--RTIFLPVYDVSGNLWEnFGYYIRREGKDyarPVFQGDWRKYVRANNLKPGDKIIFRVEENd 94 7888877777776..8*******777877333..5667999********84677445555555679************************88764 PP SEE CS B3 88 sef 90 ++ Thecc1EG046144t1 95 ANG 97 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.742 | 2 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.81E-14 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.20E-17 | 3 | 89 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-13 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.5E-9 | 4 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAHFEKYLTE VDVKKQMAIP TDFMRHLPYY EGGRTIFLPV YDVSGNLWEN FGYYIRREGK 60 DYARPVFQGD WRKYVRANNL KPGDKIIFRV EENDANGAPR YTIAAQRRIF LFEYRFTASE 120 WLIPKSAIKD LSHMISQEVA AIDLYSTSVG LLATTDCFFD FQLTKESPMK M* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021288477.1 | 2e-56 | uncharacterized protein LOC110419711 | ||||
TrEMBL | S1S485 | 1e-126 | S1S485_THECC; Uncharacterized protein | ||||
STRING | EOY20511 | 1e-127 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22252 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG046144t1 |
Entrez Gene | 18507082 |
Publications ? help Back to Top | |||
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