PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045790t1
Common NameTCM_045790
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 317aa    MW: 34199.1 Da    PI: 7.0554
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045790t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.83.4e-30101154155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +prl+Wtp+LH+rFv+av++L G+++A+Pkti+++m+v+gLt+e+v+SHLQkYRl
  Thecc1EG045790t1 101 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQFMSVDGLTRENVASHLQKYRL 154
                       59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.89298157IPR017930Myb domain
SuperFamilySSF466893.67E-2098158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-30100159IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24102154IPR006447Myb domain, plants
PfamPF002491.9E-7104153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRDEDSNWFA RWEEELPSPE ELMPLSQTLI TPDLALAFDI RNPNHHHHLQ QQQQQPQPPP  60
PPPPSAAGQP PSQPTSAEFA ADSGDLGSGA AGDEPARTLK RPRLVWTPQL HKRFVDAVAH  120
LGIKNAVPKT IMQFMSVDGL TRENVASHLQ KYRLYLKRMQ GLSGGGGGGG GGANGGAGGA  180
SLSATADPVT DHLFASSPVP PHFLHPGRGN SEHFLPFVPV PALQHHHHHQ QQQIVAAAVG  240
HPHLQTQYHR QMGHFGSSPN GQFEHPFLGR QTQQPMHRMG GAPVHNQVPS SYVEDLESAN  300
GNGGRKVLTL FPTGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-31101157157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017977610.10.0PREDICTED: transcription factor PCL1 isoform X1
RefseqXP_017977611.10.0PREDICTED: transcription factor PCL1 isoform X1
RefseqXP_017977612.10.0PREDICTED: transcription factor PCL1 isoform X1
SwissprotO222103e-65MYBC1_ARATH; Transcription factor MYBC1
TrEMBLS1RTN70.0S1RTN7_THECC; Homeodomain-like superfamily protein
STRINGEOY203180.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.14e-88G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]