PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045715t1
Common NameTCM_045715
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 385aa    MW: 42428.2 Da    PI: 6.0874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045715t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd +++ +v ++G+g+W++++++ g++R++k+c++rw +yl
  Thecc1EG045715t1 14 KGLWTEEEDAKILAYVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYL 61
                      678*******************************************97 PP

2Myb_DNA-binding42.31.7e-1367110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++ ++E+el++++++  G++ W+ Ia+ ++ gRt++++k++w++
  Thecc1EG045715t1  67 RESFAPQEEELIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 110
                       567889****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-25563IPR009057Homeodomain-like
PROSITE profilePS5129426.472965IPR017930Myb domain
SuperFamilySSF466897.7E-3011108IPR009057Homeodomain-like
SMARTSM007172.6E-151363IPR001005SANT/Myb domain
PfamPF002495.2E-171461IPR001005SANT/Myb domain
CDDcd001671.49E-121761No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2464116IPR009057Homeodomain-like
PROSITE profilePS5129418.0766116IPR017930Myb domain
SMARTSM007178.5E-1366114IPR001005SANT/Myb domain
PfamPF002492.3E-1267110IPR001005SANT/Myb domain
CDDcd001673.80E-972112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY  60
LRPDLKRESF APQEEELIIR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG  120
IDPVTHKPFS QILADYGNIG GLPKSRTRIG SLNRDMKNAF LLKAEPYPSP AAAAEGLMTT  180
IASSGMEPIQ DNFFANNSIN HHADSDSSLD LLSQLQAIKA LVTEASNYTG HQTISPDQFP  240
NECSLSSSPS SSTCSTCSTA AQQKSALAFS WRDFLLEDAF LPADHPQGQE DHALEFSSRD  300
FAGHQTPNVV PQSHSNNEIS AERKVDNNNV NNNHNGVQGM DSGVPSYGFH ASSSTDDSSF  360
IATMLDQENE MFSEFANLLE DPCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150358e-38AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972752.10.0PREDICTED: transcription factor MYB35
TrEMBLS1SMA00.0S1SMA0_THECC; Duplicated homeodomain-like superfamily protein, putative
STRINGEOY202840.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-76MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]