PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG045715t1 | ||||||||
Common Name | TCM_045715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 385aa MW: 42428.2 Da PI: 6.0874 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v ++G+g+W++++++ g++R++k+c++rw +yl Thecc1EG045715t1 14 KGLWTEEEDAKILAYVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.3 | 1.7e-13 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++ ++E+el++++++ G++ W+ Ia+ ++ gRt++++k++w++ Thecc1EG045715t1 67 RESFAPQEEELIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 110 567889****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.472 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.07 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-12 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-9 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY 60 LRPDLKRESF APQEEELIIR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG 120 IDPVTHKPFS QILADYGNIG GLPKSRTRIG SLNRDMKNAF LLKAEPYPSP AAAAEGLMTT 180 IASSGMEPIQ DNFFANNSIN HHADSDSSLD LLSQLQAIKA LVTEASNYTG HQTISPDQFP 240 NECSLSSSPS SSTCSTCSTA AQQKSALAFS WRDFLLEDAF LPADHPQGQE DHALEFSSRD 300 FAGHQTPNVV PQSHSNNEIS AERKVDNNNV NNNHNGVQGM DSGVPSYGFH ASSSTDDSSF 360 IATMLDQENE MFSEFANLLE DPCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 8e-38 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972752.1 | 0.0 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | S1SMA0 | 0.0 | S1SMA0_THECC; Duplicated homeodomain-like superfamily protein, putative | ||||
STRING | EOY20284 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-76 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG045715t1 |
Entrez Gene | 18507040 |
Publications ? help Back to Top | |||
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