PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG045701t3 | ||||||||
Common Name | TCM_045701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 21601.2 Da PI: 4.8747 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 4.8e-08 | 81 | 126 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++E RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Thecc1EG045701t3 81 SANEFARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 126 677888******************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.23E-14 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.148 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-5 | 81 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 81 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-7 | 81 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-7 | 87 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDPPLINESS FSAANLSSYS LAEIWPFPIN SRSDPNVTTA GRLGVRMGTL GGFGESSGHR 60 DGFGADLSSE DESSKMVSTT SANEFARREK ISERMKILQD LVPGCNKVIG KALVLDEIIN 120 YIQSLQRQVE FLSMKLEAVN SRMNMSPSIE GFHSKDLGSQ PYDAAGMIFG AQAAREYAQG 180 SQPEWLQMHV GGNFERAT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007099736.2 | 1e-102 | PREDICTED: transcription factor bHLH79 isoform X1 | ||||
Swissprot | Q84T08 | 2e-50 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | S1RTK7 | 1e-145 | S1RTK7_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 3 | ||||
STRING | EOY20281 | 1e-105 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-53 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG045701t3 |
Entrez Gene | 18507039 |
Publications ? help Back to Top | |||
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