PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG045701t2 | ||||||||
Common Name | TCM_045701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 24667.5 Da PI: 7.6706 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.7e-11 | 145 | 192 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Thecc1EG045701t2 145 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 192 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-18 | 139 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.97E-10 | 139 | 196 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 141 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 141 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-8 | 145 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 147 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDPPLINESS FSAANLSSYS LAEIWPFPIN SRSDPNVTTA GRLGVRMGTL GGFGESSGHR 60 DGFGADLSSE DESSKMVSTT SANEFNDSNG KRVKSSTKNE NVISKAEVET SSAAGSKPEQ 120 YGKPTEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKALV 180 LDEIINYIQS LQRQVEFLSM KLEAVNSRMN MSPSIEGFHS KDGRGI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007099736.2 | 1e-162 | PREDICTED: transcription factor bHLH79 isoform X1 | ||||
Swissprot | Q9LV17 | 4e-70 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | S1SI06 | 1e-165 | S1SI06_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2 | ||||
STRING | EOY20281 | 1e-162 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 3e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG045701t2 |
Entrez Gene | 18507039 |
Publications ? help Back to Top | |||
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