PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG044728t2 | ||||||||
Common Name | TCM_044728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 280aa MW: 30354.4 Da PI: 5.0603 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 43.2 | 8.7e-14 | 6 | 62 | 18 | 74 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ Thecc1EG044728t2 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTM 62 5789**************************************999988877777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.5E-24 | 3 | 67 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.29E-14 | 4 | 69 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-17 | 8 | 68 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSSLHLRVP DYGHGHSDAG ADDRTISKRR KAAGDEGNDS DEESKRSRMH DVGHAGTSGR 120 GRGRGRGRGR GRGARNVERD SHRELEPEPC QPLQHSNKSL STPGMVIDDG SESKELMKEN 180 TIGEDANQAV RNFDLNAEVD ENVDTKASAG ASAAAATTAT ATAAAAAQPS SAEPTTETKH 240 EEYPGWSLSE MDKMAIDPLQ LAQLGRRLDE DEEDYDEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-21 | 2 | 68 | 5 | 71 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 131 | RGRGRGRGRGR |
2 | 123 | 132 | RGRGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964448 | 1e-115 | JX964448.1 Gossypium hirsutum clone NBRI_TRANS-717 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021296645.1 | 1e-157 | LOW QUALITY PROTEIN: dr1-associated corepressor homolog | ||||
TrEMBL | A0A061FSF3 | 0.0 | A0A061FSF3_THECC; Nuclear factor Y isoform 2 | ||||
STRING | EOY19581 | 1e-156 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 5e-61 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG044728t2 |
Entrez Gene | 18587058 |
Publications ? help Back to Top | |||
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