PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG044725t1

Common Name

TCM_044725

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 322aa MW: 35204.5 Da PI: 7.2887

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG044725t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs++ L H++ H Thecc1EG044725t1 141 FSCNYCKREFSTSQALGGHQNAH 163 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07727	4.9E-6	4	51	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF57667	1.92E-6	138	168	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-4	139	167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.4E-6	140	165	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.718	141	168	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	143	163	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MLPIYLLVYV DNIILSGRLF SQLDNFILEL DNEFSTKCFG QIHYFLAMVI ISAELCPSEA 60 SSISATLEGV TPNKVNEAAK ASESSLGILL DLKLFSDDSL CKPKIELNLF NPMSPTSSHS 120 KDSGDHQTLR EKRSDDSNRV FSCNYCKREF STSQALGGHQ NAHKQERALA KRRQGMDVNG 180 FGFPPYPYNP YSTISPHPFY GSLNRSPLGV RLDSMIHKPS YPWTSIGGFH HLGHGWSSQA 240 ILTPPRPTIS ERLSMNNGGF GISGPSSSSR FQETGAPCSF SDISQANVAT NKAARSDYLQ 300 PSNPSGSDNN DASKIDLSLK L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017984355.1	0.0	PREDICTED: zinc finger protein 1
TrEMBL	A0A061FQI6	0.0	A0A061FQI6_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	EOY19580	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20134	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-20	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Thecc1EG044725t1
Entrez Gene	18587057

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]