PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG044616t1
Common NameTCM_044616
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 647aa    MW: 73674.8 Da    PI: 7.7928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG044616t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-09461502240
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       ++WT+eE ell ++ +++++g   +W+ I++++g+gR+ +++
  Thecc1EG044616t1 461 KPWTKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 502
                       69***********************************99876 PP
2Myb_DNA-binding28.63.2e-09589635347
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                        W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ ++
  Thecc1EG044616t1 589 VWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFASL 635
                       6********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.79E-2087175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.6E-2093199IPR001623DnaJ domain
SMARTSM002715.2E-1496171IPR001623DnaJ domain
CDDcd062571.79E-1297168IPR001623DnaJ domain
PROSITE profilePS5007618.16697179IPR001623DnaJ domain
PfamPF002263.9E-1697176IPR001623DnaJ domain
PRINTSPR006251.5E-6102120IPR001623DnaJ domain
PRINTSPR006251.5E-6120135IPR001623DnaJ domain
PRINTSPR006251.5E-6151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.609455510IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-6457502IPR009057Homeodomain-like
SMARTSM007178.5E-8459512IPR001005SANT/Myb domain
PfamPF002491.1E-7461502IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-8461504IPR009057Homeodomain-like
CDDcd001675.99E-6462502No hitNo description
PROSITE profilePS5129310.263585640IPR017884SANT domain
SMARTSM007172.0E-9586638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-6587635IPR009057Homeodomain-like
SuperFamilySSF466892.02E-9588644IPR009057Homeodomain-like
PfamPF002491.0E-7589635IPR001005SANT/Myb domain
CDDcd001671.30E-6590636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAVHTSIQLI SYSQELVDGQ PLYVSSNCLP VKALNYEPAG HAFHCAALKL LGCEEDDIAE  60
VDDQNVSNNK EQVYMPSSDS YSSKGKKKSA ADGKQQDHYA LLGLSHLRYL ATEDQIRRSY  120
REAALRHHPD KLAALLLAEE TEAAKQVKKD EIENHFKSIQ EAYEILIDPV RRRIYDSTDE  180
FDDEIPTDCG PQDFFKVFGP AFMRNGRWSV NQPIPTLGDD STPLKDVDNF YNFWYSFKSW  240
REFPHADEYD LEQAESRDHK RWMERQNAKL SEKARREEYA RIRALVDNAY KRDPRILRRK  300
EEQKAEKQRK KEAKFRAKQL QEEEAARAAE EERCRKEEEE KRAAEAALQH KKMKEKEKKL  360
LRKERTRLRT LSAPALSQHL LDLSEDDVES LCTSLGIEQL RSLCDKMENK EGLEQAKIIR  420
DARGYSGNLE KKPDEKKSSE LNGSVESNGS VLLSSFEKKE KPWTKEEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL FQKPDAAKAF DSFLEKRKPA QSIASPLSTR  540
DEVEGVSTPS GTESSAVKTV SPEDSGRIAN NPVDVASGIG VSSSSEQDVW SAVQERALVQ  600
ALKTFPKETS QRWERVAAAV PGKTVNQCKK KFASLKENFR NKKNAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1919329620123Zuotin
5dje_B4e-1919329620123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017985054.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A061FQZ20.0A0A061FQZ2_THECC; DnaJ domain,Myb-like DNA-binding domain
STRINGEOY195010.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]