PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG044611t2

Common Name

TCM_044611

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 556aa MW: 60387.2 Da PI: 4.7072

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG044611t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.6e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l Thecc1EG044611t2 39 KGPWTSAEDAILIEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	53.9	4.1e-17	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ Thecc1EG044611t2 92 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.409	34	86	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-30	37	133	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-15	38	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-24	40	93	IPR009057	Homeodomain-like
CDD	cd00167	4.13E-12	41	86	No hit	No description
Pfam	PF13921	4.3E-16	42	102	No hit	No description
PROSITE profile	PS51294	26.872	87	141	IPR017930	Myb domain
SMART	SM00717	2.3E-17	91	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-26	94	140	IPR009057	Homeodomain-like
CDD	cd00167	1.11E-12	94	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0043068	Biological Process	positive regulation of programmed cell death
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0045926	Biological Process	negative regulation of growth
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MSHTKNERED GMLSEDQAES PLADDGNCGG AGGGVVMKKG PWTSAEDAIL IEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES HSTSAVNGGD KGPQDIMQNN 180 SYQIPDVIFD SLKANQSVLP YVPELPDIST SSMLMKGLGS SQYCSFMPPT IHRQKRLRES 240 TAFFPGYTGA VKNECPLFDQ FQDDMSDKAA QSFGVSFQIE PDPTAKNSES FGVFPGSHAL 300 TNGNFSASES SLEAVKLELP SLQYPETELG NWGTISCPPP LLESVDAFIQ SPPPTSGVES 360 DSLSPHNSGL LDALLHEAKT LSSAKNHASD KSSNSSTPGD IAESSNFNIC ETEWENCGQP 420 LSPMGHSATS LFSECISASG SSLDEQPPAE TFTESHVKSE TADHVFTPEI QKEAPIRLDS 480 TRPDTLLASN WLEQGCVYDK DQTIMSDAIA TLLGDDLSSE YKNMAAGTSI SSQAWGLGSC 540 AWNNMPAVCQ MSELP*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MSHTKNERED GMLSEDQAES PLADDGNCGG AGGGVVMKKG PWTSAEDAIL IEYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES HSTSAVNGGD KGPQDIMQNN  180
SYQIPDVIFD SLKANQSVLP YVPELPDIST SSMLMKGLGS SQYCSFMPPT IHRQKRLRES  240
TAFFPGYTGA VKNECPLFDQ FQDDMSDKAA QSFGVSFQIE PDPTAKNSES FGVFPGSHAL  300
TNGNFSASES SLEAVKLELP SLQYPETELG NWGTISCPPP LLESVDAFIQ SPPPTSGVES  360
DSLSPHNSGL LDALLHEAKT LSSAKNHASD KSSNSSTPGD IAESSNFNIC ETEWENCGQP  420
LSPMGHSATS LFSECISASG SSLDEQPPAE TFTESHVKSE TADHVFTPEI QKEAPIRLDS  480
TRPDTLLASN WLEQGCVYDK DQTIMSDAIA TLLGDDLSSE YKNMAAGTSI SSQAWGLGSC  540
AWNNMPAVCQ MSELP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-32	39	140	7	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00490	DAP	Transfer from AT5G06100	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007010686.2	0.0	PREDICTED: transcription factor GAMYB
Refseq	XP_007010687.2	0.0	PREDICTED: transcription factor GAMYB
TrEMBL	A0A061FS54	0.0	A0A061FS54_THECC; Myb domain protein 65, putative isoform 1
STRING	EOY19496	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-145	myb domain protein 33

Link Out ? help Back to Top
Phytozome	Thecc1EG044611t2
Entrez Gene	18586987

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]