PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG044596t1

Common Name

TCM_044596

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 322aa MW: 35790.1 Da PI: 8.6625

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG044596t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49	1.3e-15	250	297	4	51
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN +Lk++ e+ Thecc1EG044596t1 250 DRRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENARLKDRKEQ 297 79****************************************977554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.9E-14	241	296	No hit	No description
SMART	SM00338	5.6E-12	247	319	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	249	297	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-13	250	299	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.25E-23	251	305	No hit	No description
SuperFamily	SSF57959	3.38E-11	251	297	No hit	No description
PROSITE pattern	PS00036	0	254	269	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGIQTMVSQG DSGSNGKESQ FQQLTRQNSM YSLTLDEVQN QLGDLGKPLS SMNLDELLKN 60 VWTAEANQNY GMETEGTALT NQTALQRQSS LSLTSALSKK TVDEVWRDIQ QSKNDGEKKY 120 RERQPTLGEM TLEDFLVKAG VVAEASTDKK GGGSVAGVDL SVAPQFAQQG QWMQYPQPQY 180 QHPQQSLMGV YMSAQPMPQP LTIGATAVMD VSYPDNQVPL PSPLMGTLSD TQASGRKRGA 240 PEDMIEKNVD RRQKRMIKNR ESAARSRARK QAYTNELENK VSRLEEENAR LKDRKEQEMK 300 LPSAPPPEPK YQLRRTSSAP F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	296	ARLKDRKEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007010665.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_007010666.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	1e-95	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A061FQW4	0.0	A0A061FQW4_THECC; BZIP domain class transcription factor isoform 1
STRING	EOY19478	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	4e-83	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Thecc1EG044596t1
Entrez Gene	18586978

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]