PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043349t1
Common NameTCM_043349
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 328aa    MW: 35915.5 Da    PI: 6.7901
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043349t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076138160123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+++F++   L  H  +H
  Thecc1EG043349t1 138 YECKTCNRTFPSFQALGGHRASH 160
                       99**********99999998887 PP
2zf-C2H213.20.00027220242123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F++   L  H+r+H
  Thecc1EG043349t1 220 HECSICGAEFTSGQALGGHMRRH 242
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.46E-9137160No hitNo description
PfamPF139123.0E-13137162IPR007087Zinc finger, C2H2
SMARTSM003550.052138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658138165IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576677.46E-9215242No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4218244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.4E-13219244IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263220244IPR007087Zinc finger, C2H2
SMARTSM003550.01220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEAPEEVAMG SKDHSNIVKG KRTKRLRPQS PIPFAITSNS IHNEDEGEFD GNSANVDNKN  60
VTLLSPSSSS SSSEYQDSTE EEEDMANCLI LLAQGQSRQS TKQADDHDHH TGTDNKFTSR  120
KFMEAPSNGT GKAGYYVYEC KTCNRTFPSF QALGGHRASH KKPKTAAMVD EKTRQFTAAA  180
SDEEGQFIRT NNLSSLSLQL TNNNNNNRGL YSNNNKAKVH ECSICGAEFT SGQALGGHMR  240
RHRGPIGGSI PTASTALSLT VPVAMESEQP KKPRNVLSLD LDLNLPAPED DHRESKFPFA  300
SKQQQQQQQQ QQSPLVFSAP TLVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007010041.20.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A061FP500.0A0A061FP50_THECC; C2H2-type zinc finger family protein, putative
STRINGEOY188510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-74C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]