PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043302t1
Common NameTCM_043302
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 427aa    MW: 46623.2 Da    PI: 4.5967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043302t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18181232156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       + y+GVr++  +g+WvAeIr p  ng  kr++lg+f ta eAa a+++a++ ++ge
  Thecc1EG043302t1 181 CNYRGVRQRT-WGKWVAEIRAP--NG-GKRIWLGTFPTACEAALAYDEAARTMYGE 232
                       56*****999.**********9..33.5************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534741.18E-5982IPR029058Alpha/Beta hydrolase fold
PfamPF004502.0E-5959IPR001563Peptidase S10, serine carboxypeptidase
Gene3DG3DSA:3.40.50.18202.0E-7974IPR029058Alpha/Beta hydrolase fold
CDDcd000181.73E-30181240No hitNo description
PfamPF008473.2E-13181232IPR001471AP2/ERF domain
SMARTSM003802.6E-35182245IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-20182239IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-29182240IPR001471AP2/ERF domain
PROSITE profilePS5103221.43182239IPR001471AP2/ERF domain
PRINTSPR003671.9E-9183194IPR001471AP2/ERF domain
PRINTSPR003671.9E-9205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004185Molecular Functionserine-type carboxypeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSFISNSKQG FAIGNGLTDP AIQNKAYLDY ALDMGVIKKS DYNPINKLVP VCETAIKLCA  60
GVDILYIVMD IQCNEILVVQ LIKEIKVIFG DVASMGRGFQ IPELLFTTLD HDCKKDQNLK  120
VASTLSSDSC RKRKRRDGLS VADTLKLWSQ SKDAKQSCKA PAKGSKKGCM KGKGGPQNQS  180
CNYRGVRQRT WGKWVAEIRA PNGGKRIWLG TFPTACEAAL AYDEAARTMY GENAILNMPH  240
ISGSDSVATT SHAFSEATTC AASNSMTVPS NYEICGRDVD REGEPSRMNV EYTVDSETAW  300
TMDGENAMLN MPHVSDFDSV TITSPVFLEA TTCTASNSMT GSSNSEICGR DVDGEGEPSK  360
MNVEYTVDSE AATTSQDVKT DAKSEEHTDD SWLTNGLDYA KNIAIDFGET ADWFEDYCFN  420
VPEFFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-18182239260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3135141e-64AJ313514.1 Theobroma cacao mRNA for carboxypeptidase type III (CP-III gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984289.11e-132PREDICTED: uncharacterized protein LOC108663595
TrEMBLA0A061FVI50.0A0A061FVI5_THECC; Dehydration-responsive element-binding protein 2C
STRINGEOY188140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-25DRE-binding protein 2A
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]