PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043203t1
Common NameTCM_043203
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 428aa    MW: 47881.5 Da    PI: 4.16
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043203t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.98.6e-15101335112
               NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka......eekewyfFskrdkkya...tgkrknra......tksg 81 
                       + F+P+d e+v+++L k ++g+ + + +  i+ +d+y ++P  L   v++      + ++ + F++r+k ++   +gkr++r+       + g
  Thecc1EG043203t1  10 VVFNPSDREIVSFFLPKLISGEGIGELSYlIEFCDLYCIKPAALFD-VNKgflpfvKPNQRFVFTHRQKISQknaNGKRPRRVldsravGDGG 101
                       67*********************88877769999**********63.222244554677999999998754433389999998565554449* PP

               NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgr 112
                       +W+++  +k++l++ +++++g  +tL fy+ +
  Thecc1EG043203t1 102 FWRSSTGEKPILDEqGEHVIGYVNTLNFYEYK 133
                       ***99999999998567789*********654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.0766198IPR003441NAC domain
SuperFamilySSF1019416.67E-177134IPR003441NAC domain
PfamPF023653.6E-88137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MMFYPPAPVV VFNPSDREIV SFFLPKLISG EGIGELSYLI EFCDLYCIKP AALFDVNKGF  60
LPFVKPNQRF VFTHRQKISQ KNANGKRPRR VLDSRAVGDG GFWRSSTGEK PILDEQGEHV  120
IGYVNTLNFY EYKEWVIGKI KDTACSEEDK CVAFWVKELF GNLLLGNKEC PSSALMQEAV  180
FSGNLPLPDY GQCDPLIENY VDGRLQQSEN LECQSSILVE RSESLVNGFG EMDSNGLVGE  240
GYSLMDQLLD EDPFNEVDQL LGISNNDQIS NLDELVIDKS VDELVREYEA LIDGDGLKEV  300
DQLHGISNNN ESSKSVEPVI VTGKNVDELS GGYEELNYDN SFKEVDQLWG ISNTDENSKL  360
DELFTDKDVD DIHALLAFDH LPRCAALVCF CYVAPRNFDI KGDQENRRSS GSSNIKKDGV  420
MEDYNGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009879.20.0PREDICTED: uncharacterized protein LOC18586425
TrEMBLA0A061FPY00.0A0A061FPY0_THECC; Uncharacterized protein
STRINGEOY187020.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.13e-08NAC domain containing protein 71
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]