PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043195t1
Common NameTCM_043195
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 374aa    MW: 41998.2 Da    PI: 4.2194
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043195t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.9e-2181543128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka......eekewyfFskrdk...kyatgkrknra......tk 79 
                       pG+ F+P+d  +v+ +L k ++g+ + + +  i+ +d+y ++P  L   v++      + ++ + F+ r+k   k+a+gkr++r+       +
  Thecc1EG043195t1   8 PGVVFNPSDRVIVSLFLPKLMTGEGIGELSYlIEFCDLYCMKPAALFD-VNKgflpfvKPNQRFVFTYRQKisqKNANGKRPRRVldsraaGD 99 
                       9************************88877769999**********63.22223444455677777766651115668999999856555444 PP

               NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                        g+W+++  +k++l++ +++++g  +tL fy     k ++++++kt+W+mheyrl
  Thecc1EG043195t1 100 GGFWRSSTGEKPILDEqGEHVIGYVNTLNFYeykgeKRSSKDANKTSWLMHEYRL 154
                       9****99999999998567789*********8866545677788*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-274168IPR003441NAC domain
PROSITE profilePS5100531.4256170IPR003441NAC domain
PfamPF023651.8E-128154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMFHPPAPGV VFNPSDRVIV SLFLPKLMTG EGIGELSYLI EFCDLYCMKP AALFDVNKGF  60
LPFVKPNQRF VFTYRQKISQ KNANGKRPRR VLDSRAAGDG GFWRSSTGEK PILDEQGEHV  120
IGYVNTLNFY EYKGEKRSSK DANKTSWLMH EYRLPGENFQ EWVICKIKDT ACLEKDECVA  180
FWVKELFGNL LLGNKECPPS ALMQEAVFSG NLPLPDDGQC DPLIDNYVDG RLQQSENLEC  240
QSSILVEGSE SLVNGFGEME SNGLVGEGYS LMDQLRDEDP FNEVDQLLGI SNNDQISNLD  300
ELVIDKSVDK LLREYEALID GDCLKELDQL HGISNNNEIS KSVEPVTDSN VDELLGGYEE  360
LNDDESFKKL DQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009879.20.0PREDICTED: uncharacterized protein LOC18586425
TrEMBLA0A061FPA60.0A0A061FPA6_THECC; Uncharacterized protein
STRINGEOY186930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-12NAC domain containing protein 74
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]