PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043158t2
Common NameTCM_043158
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 342aa    MW: 37088.5 Da    PI: 7.1394
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043158t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17250283134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Thecc1EG043158t2 250 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 283
                       99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.2E-792334IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-16244294IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385244280IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-15248281IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-15248307No hitNo description
CDDcd002024.44E-14249296No hitNo description
PROSITE patternPS003440250275IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15250283IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MIGPTNFIDE IDCGSFFDHI DDLLDFPNED VEAGLSASDS AVNASAFPSI WTTHSESLPG  60
SDSVFSNNSA SDLSAELSVP YEDIVQLEWL SNFVDDSQCG ASLTIKKEES SSITKDSSQH  120
QFQTSSPVSV LESSSSCSGE KTLPRSPETA APGRRGRARS KRPRPTTFNP RPAIQLISPT  180
SSVNENDIPQ PFVVPKVPSD SENYAESRLL IKIPRQVNPE HKKKKKIKLS LPTAPADNNQ  240
NSSGQAVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSL  300
HSNSHKKVIE MRNKGGAAPT TMVTSSPELI PNKSNPALDF M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009854.20.0PREDICTED: GATA transcription factor 8
RefseqXP_017985092.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A061FV650.0A0A061FV65_THECC; GATA transcription factor
STRINGEOY186630.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-44GATA family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]