PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043158t1
Common NameTCM_043158
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 415aa    MW: 45674.8 Da    PI: 7.9586
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043158t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17323356134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Thecc1EG043158t1 323 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 356
                       99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-16317367IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385317353IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14321354IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-15321380No hitNo description
CDDcd002026.51E-14322369No hitNo description
PROSITE patternPS003440323348IPR000679Zinc finger, GATA-type
PfamPF003203.0E-15323356IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSLLPLLFSL CFLPLSPFKT FPFLSLSLSF CLLLSRFLKR NSPHFPRNYL VFPESFFSPV  60
TEGFFIIFYI KENMIGPTNF IDEIDCGSFF DHIDDLLDFP NEDVEAGLSA SDSAVNASAF  120
PSIWTTHSES LPGSDSVFSN NSASDLSAEL SVPYEDIVQL EWLSNFVDDS QCGASLTIKK  180
EESSSITKDS SQHQFQTSSP VSVLESSSSC SGEKTLPRSP ETAAPGRRGR ARSKRPRPTT  240
FNPRPAIQLI SPTSSVNEND IPQPFVVPKV PSDSENYAES RLLIKIPRQV NPEHKKKKKI  300
KLSLPTAPAD NNQNSSGQAV RKCMHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE  360
YRPAASPTFV PSLHSNSHKK VIEMRNKGGA APTTMVTSSP ELIPNKSNPA LDFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009854.20.0PREDICTED: GATA transcription factor 8
RefseqXP_017985092.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A061FP830.0A0A061FP83_THECC; GATA transcription factor
STRINGEOY186630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-43GATA family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]