PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG043081t1

Common Name

TCM_043081

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 221aa MW: 23916.1 Da PI: 6.7197

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG043081t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	5.2e-42	67	166	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q++ l+a+ Thecc1EG043081t1 67 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSDLQAQ 159 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Thecc1EG043081t1 160 LAKTQAE 166 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.85	66	167	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-42	67	164	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MENNDKAAIS PISVSTPFSY SPSSSSSPPT PHYSPGFPSP NSQSNSPKNS HQPPPPPASP 60 PPVVLSPCAA CKILRRRCVE KCVLAPYFPP TEPYKFTIAH RVFGASNIIK SLQELPESQR 120 ADAVSSMVYE ASARIRDPVY GCAGAICQLQ KQVSDLQAQL AKTQAELVTM QCQQANLLAL 180 ICMEMTQSKE PTSQQQPYSI DTSCFLDDSN LASAWEPLWT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	66	174	10	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	66	174	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007009738.1	1e-159	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9LQR0	4e-73	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A061FNS0	1e-158	A0A061FNS0_THECC; LOB domain-containing protein 1
STRING	EOY18548	1e-159	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-71	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Thecc1EG043081t1
Entrez Gene	18586345

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]