PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042823t1

Common Name

TCM_042823

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 476aa MW: 54634.5 Da PI: 9.908

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042823t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.9	2.4e-05	172	211	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq Thecc1EG042823t1 172 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 211 7999************99.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.699	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-4	172	215	No hit	No description
SuperFamily	SSF47459	4.84E-9	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-7	172	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55753	4.16E-45	334	473	No hit	No description
Gene3D	G3DSA:3.40.20.10	1.1E-47	340	473	IPR029006	ADF-H/Gelsolin-like domain
CDD	cd11286	1.55E-64	342	473	No hit	No description
PROSITE profile	PS51263	38.56	343	475	IPR002108	Actin-depolymerising factor homology domain
SMART	SM00102	6.6E-60	348	475	IPR002108	Actin-depolymerising factor homology domain
Pfam	PF00241	3.5E-35	350	472	IPR002108	Actin-depolymerising factor homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0003779	Molecular Function	actin binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MRNALLPPVS SQFYIIGNNE VQMPYLDVLM QMESKGNVHG GGFSMESKIF NNDTQLRDGA 60 FVIPYQSHFN SDLQDYQSGS SNCDNNFQQS MPLTSKLALP QFEQDIQKLQ NGRKRPIVVN 120 DQMPLNGTSA LNEWKKKNKR KRLPSFEQQQ SRQITEAVTE IKQCRMHMPA VRRSQKLSDK 180 ITALQKLVSP YGKTDTASVL QEASLYIKLL QEQIQNLFQM LSSSYNSLRA IHPQEIGKKQ 240 QDLRSRGLCL VPISFTQKVT KEDQKEKRES KEKRRKKNNK SKRLGGHFQA VIANPKNREK 300 KFIYTFLLPF RSLFFSEEAL DFLGLFSLFS SLSRETMANA ASGMAVDDDC KLKFLELKAK 360 RTYRFIVFKI EEKQKQVVVE KLGEPTDSYE AFTASLPADE CRYAVYDFDF VTEENCQKSR 420 IIFIAWSPDT SKVRSKMIYA SSKDRFKREL DGIQVELQAT DPTEMGLDVI KSRTT*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MRNALLPPVS SQFYIIGNNE VQMPYLDVLM QMESKGNVHG GGFSMESKIF NNDTQLRDGA  60
FVIPYQSHFN SDLQDYQSGS SNCDNNFQQS MPLTSKLALP QFEQDIQKLQ NGRKRPIVVN  120
DQMPLNGTSA LNEWKKKNKR KRLPSFEQQQ SRQITEAVTE IKQCRMHMPA VRRSQKLSDK  180
ITALQKLVSP YGKTDTASVL QEASLYIKLL QEQIQNLFQM LSSSYNSLRA IHPQEIGKKQ  240
QDLRSRGLCL VPISFTQKVT KEDQKEKRES KEKRRKKNNK SKRLGGHFQA VIANPKNREK  300
KFIYTFLLPF RSLFFSEEAL DFLGLFSLFS SLSRETMANA ASGMAVDDDC KLKFLELKAK  360
RTYRFIVFKI EEKQKQVVVE KLGEPTDSYE AFTASLPADE CRYAVYDFDF VTEENCQKSR  420
IIFIAWSPDT SKVRSKMIYA SSKDRFKREL DGIQVELQAT DPTEMGLDVI KSRTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1f7s_A	2e-80	337	474	1	138	ACTIN DEPOLYMERIZING FACTOR (ADF)
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ088156	1e-177	DQ088156.2 Gossypium hirsutum actin depolymerizing factor (ADF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021295682.1	0.0	LOW QUALITY PROTEIN: uncharacterized protein LOC110425179
TrEMBL	A0A061FMX5	0.0	A0A061FMX5_THECC; Actin depolymerizing factor 4 isoform 1
STRING	EOY18223	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17246	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	6e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042823t1
Entrez Gene	18586140

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]