PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042784t2
Common NameTCM_042784
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 349aa    MW: 37039.4 Da    PI: 8.6717
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042784t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.9e-3969129262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       +e al+cprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Thecc1EG042784t2  69 PEVALECPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 129
                       567899****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3256122IPR003851Zinc finger, Dof-type
PfamPF027018.1E-3372127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.56273127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWQQPPT QQPGVTSDNH HNPQLPPPPP PPQVGGGGAG AIRPGSMAER  60
ARLAKIPQPE VALECPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG  120
GCRRNKRSKG SNRSKSPAVS ERQTGSSSSS STLASTSCTD MLGHMTPAPP QLPLLPPLHH  180
LGDYNSGVIG INFGGIQAQV AAAIGGTGGT SASNMDFHIG TSSSGGGSML TNGLVEQWRS  240
LQQVQQFPFL SSLEPPAGLY PFESEGVEAP SYGGQLRSKP LESAITQLAA IKMEETHHQG  300
LNLSRNFLGI SGSDQYWGGG GGNAWTDLSG FTSSSTSHLL FHQREINS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009361.20.0PREDICTED: dof zinc finger protein DOF3.6 isoform X1
TrEMBLA0A061FMB50.0A0A061FMB5_THECC; F-box family protein, putative isoform 2
STRINGEOY181710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-39OBF-binding protein 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]