PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042784t1 | ||||||||
Common Name | TCM_042784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 341aa MW: 36027.3 Da PI: 8.6705 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.6e-39 | 69 | 129 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e al+cprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Thecc1EG042784t1 69 PEVALECPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 129 567899****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 56 | 122 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.8E-33 | 72 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.562 | 73 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 75 | 111 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MVFSSVPVYL DPPNWQQPPT QQPGVTSDNH HNPQLPPPPP PPQVGGGGAG AIRPGSMAER 60 ARLAKIPQPE VALECPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG 120 GCRRNKRSKG SNRSKSPAVS ERQTGSSSSS STLASTSCTD MLGHMTPAPP QLPLLPPLHH 180 LGDYNSGVIG INFGGIQAQV AAAIGGTGGT SASNMDFHIG TSSSGGGSML TNGLVEQWRS 240 LQQVQQFPFL SSLEPPAGLY PFESEGVEAP SYGGQLRSKP LESAITQLAA IKMEETHHQG 300 LNLSRNFLGI SGSDQYWGGG GGNAWTDLSG FTSSSTSHLL * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007009361.2 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6 isoform X1 | ||||
TrEMBL | A0A061FLM3 | 0.0 | A0A061FLM3_THECC; F-box family protein, putative isoform 1 | ||||
STRING | EOY18171 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 3e-39 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042784t1 |
Entrez Gene | 18586109 |
Publications ? help Back to Top | |||
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