PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042734t1

Common Name

TCM_042734

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 292aa MW: 32610.6 Da PI: 7.3278

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042734t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Thecc1EG042734t1 55 YSCSFCRREFRSAQALGGHMNVH 77 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.78E-6	52	82	No hit	No description
PROSITE profile	PS50157	11.219	55	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0048441	Biological Process	petal development
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEQDQYWMWM RRRRILKSHF QVSMNSLSEY SWEEKAFAED AAGSLGGCIW PPRSYSCSFC 60 RREFRSAQAL GGHMNVHRRD RARLKQSALS SHNEVVVPHH QNHRKISPKS SDEPKILPHQ 120 AGPLDSTDDL DHNSTASTFS ASRVSVLSTQ ENFSTTSPVQ EQHKGQLFGS DSTAKRSLNN 180 IFLDSKPEAE KSIKLARGGD SVCLDSDDDH VETNLSVGLN PVFFQNRPTV ITCGEEAISC 240 KRPKIAVSTL PFIVSEETYS PLQWQVLGLK PAGSMEDLDL ELRLGVLPKV K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	6e-13	50	77	2	29	superman protein
2l1o_A	6e-13	50	77	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007009276.2	0.0	PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBL	A0A061FLY1	0.0	A0A061FLY1_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	EOY18086	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5128	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	9e-27	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042734t1
Entrez Gene	18586064

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]