PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG042730t1 | ||||||||
Common Name | TCM_042730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 25001.1 Da PI: 4.5102 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++ Thecc1EG042730t1 7 SCGACKFLRRKCTSECVFAPYFCYDEaASHFAAVHKVFGASNVSKLLLHLPMHNRSDAAVTISYEALARMRDPIYGCVAHIFALQQQVANLQE 99 6***********************9868***************************************************************** PP DUF260 93 elallke 99 e++ l + Thecc1EG042730t1 100 EIEILIN 106 *997755 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.668 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-37 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DEAASHFAAV HKVFGASNVS KLLLHLPMHN 60 RSDAAVTISY EALARMRDPI YGCVAHIFAL QQQVANLQEE IEILINQMAN HAADQVPSCG 120 NTQAATYPDG KIQFASLHET ISTVYYQDEQ AALPTNHPGL LTGNQILDAQ LCEPLPPSYE 180 WEDQNFLCNF YQNPPEINLE GVESGILIDY PCMGSSGTTT NWEGPSW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 3 | 116 | 7 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 3 | 116 | 7 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007009269.1 | 1e-172 | PREDICTED: LOB domain-containing protein 14 | ||||
TrEMBL | A0A061FTN7 | 1e-170 | A0A061FTN7_THECC; LOB domain-containing protein 29 | ||||
STRING | EOY18079 | 1e-171 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-59 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG042730t1 |
Entrez Gene | 18586060 |
Publications ? help Back to Top | |||
---|---|---|---|
|