PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG042705t1 | ||||||||
Common Name | TCM_042705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 738aa MW: 83092.6 Da PI: 5.6289 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 406.3 | 2.9e-124 | 363 | 733 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+av+s+d + a++lL+++++++sp gd mqR+a+yf+ +L+arla+s++++y al +++ts +++l+a++lf ++P+ k+ Thecc1EG042705t1 363 LRTLLTLCAQAVASDDRRSANELLKQIRQHSSPMGDGMQRMAHYFVDGLEARLAGSGTQIYTALITKPTS---AADVLKAYHLFLAACPFRKL 452 5789**************************************************************9999...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s++ N++I++ +e++ r+HiiDf+i +G+QWp+L++ L+sRp+gpp+lRiTg++ p++g +e++eetg rLa++Ae+++vpfef++ +a+ Thecc1EG042705t1 453 SNFFSNKTIMNLAENAPRLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDLPQPGfrPAERVEETGLRLANYAETFKVPFEFHA-IAQ 544 ***********************************************************9*****************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++++++e+Lr++++E+l+Vn++++l +llde+v +es+r++vL+l+++++P+v+++ + +n++ F +rf eal +ys+lfd+le+++pr Thecc1EG042705t1 545 KWDTIQIEDLRIDSDEVLVVNCMYRLRNLLDETVVVESPRNKVLNLIRKMNPDVFILGIVNGACNAPFFITRFREALFHYSTLFDMLETNVPR 637 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e er+ +Ere++g+e++nv+acegaer+er et+++W+ r+++aG++++pl+e+++k+ak + + + + + ++e++ +l++gWk+r ++++ Thecc1EG042705t1 638 EIPERMLIEREIFGWEAMNVIACEGAERIERLETYKQWQVRISRAGLRQLPLNEEIMKTAKERVDTSYHKDFVIDEDNRWLLQGWKGRIVYAL 730 ********************************************************************888********************** PP GRAS 371 SaW 373 S+W Thecc1EG042705t1 731 SSW 733 *** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.039 | 337 | 714 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-121 | 363 | 733 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 738 aa Download sequence Send to blast |
MDRSLKGLYG SVDRFRLNDD TVLAFSGRNF DDGFQKETYV DIPPLQPAPM PRNLVPSSSV 60 NEEGDSHEDY DFSDVVLKYI NQMLMEEDME DKTCMFKESS AALQAAEKSF YEVLGQRYPH 120 SPKYELKPFT DQNQESFDDS HDQSCWRCSS ASISSSSSNL VDLGCSHDLG EQRSSSFASQ 180 ANSQSSHSSG NSTGSVLDGF VDSPVSTLRL PEIFSDSESA MQFRKGFEEA SRFLPNGQSL 240 FVDVESDGLF LKEVKEEAKG VVDKAEKNEF SQNGSRGKKN PYPEDVNLES GRSNKQSAVY 300 TGSTVSSEMF DKVLLNCQSV TDLRKALQDE TSKNVQQSGQ LKGSTGGKAR GKKQGSKRNV 360 VDLRTLLTLC AQAVASDDRR SANELLKQIR QHSSPMGDGM QRMAHYFVDG LEARLAGSGT 420 QIYTALITKP TSAADVLKAY HLFLAACPFR KLSNFFSNKT IMNLAENAPR LHIIDFGILY 480 GFQWPCLIRR LSSRPGGPPK LRITGIDLPQ PGFRPAERVE ETGLRLANYA ETFKVPFEFH 540 AIAQKWDTIQ IEDLRIDSDE VLVVNCMYRL RNLLDETVVV ESPRNKVLNL IRKMNPDVFI 600 LGIVNGACNA PFFITRFREA LFHYSTLFDM LETNVPREIP ERMLIEREIF GWEAMNVIAC 660 EGAERIERLE TYKQWQVRIS RAGLRQLPLN EEIMKTAKER VDTSYHKDFV IDEDNRWLLQ 720 GWKGRIVYAL SSWVPAS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-53 | 370 | 737 | 26 | 382 | Protein SCARECROW |
5b3h_A | 4e-53 | 370 | 737 | 25 | 381 | Protein SCARECROW |
5b3h_D | 4e-53 | 370 | 737 | 25 | 381 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007009233.2 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A061FL45 | 0.0 | A0A061FL45_THECC; GRAS family transcription factor isoform 1 | ||||
STRING | EOY18043 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG042705t1 |
Entrez Gene | 18586036 |
Publications ? help Back to Top | |||
---|---|---|---|
|