PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042629t1
Common NameTCM_042629
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 416aa    MW: 44974.6 Da    PI: 5.8766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042629t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-174994147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd  l ++v+++G ++W++Iar ++ gR++k+c++rw + 
  Thecc1EG042629t1 49 KGPWSPEEDAVLSRLVAKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 94
                      79******************************.***********985 PP
2Myb_DNA-binding56.65.9e-18101145147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r+++T eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Thecc1EG042629t1 101 RKPFTDEEDRIIISAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 145
                       789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.9524495IPR017930Myb domain
SuperFamilySSF466893.95E-3146142IPR009057Homeodomain-like
SMARTSM007172.4E-154897IPR001005SANT/Myb domain
PfamPF002497.1E-174994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2650102IPR009057Homeodomain-like
CDDcd001678.92E-155193No hitNo description
PROSITE profilePS5129426.92296150IPR017930Myb domain
SMARTSM007172.0E-17100148IPR001005SANT/Myb domain
PfamPF002495.5E-16101145IPR001005SANT/Myb domain
CDDcd001672.24E-13103146No hitNo description
Gene3DG3DSA:1.10.10.605.1E-24103149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MKGEEKESNC QDSPAVGGSC SGGGGDELEL IVAESELAGG GSGGNSRVKG PWSPEEDAVL  60
SRLVAKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCLK RKPFTDEEDR IIISAHAIHG  120
NKWASIAKLL PGRTDNAIKN HWNSTLRRRC MELGRFKPEP ADMMEDGSLE RTKASSEETL  180
SVGDINSFKH FEGRDVVMDD RPNLQVDKPP IKEDQSAAEP KDHPTLCRPV ARVSAFSVYN  240
PPSNSRTESG MSSTILMQGP LAHASRSDWG VGKILEDLCS EPVIPLCCGF GCCSTPCGGH  300
SQSSLLGPEF VDYEEPPAFS SHELISIATD LNNIAWIKSG LENSCVRIPS NTAGQRLPQG  360
ATSSMQIGIS DLYVKSDHMR FDDGRSKLTG MTAEVIPTQM PKQTFTVRSE VEGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-40481496107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009127.20.0PREDICTED: myb-related protein Pp2
SwissprotQ425752e-93MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A061FMM30.0A0A061FMM3_THECC; Myb domain protein 25, putative
STRINGEOY179370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-112myb domain protein 109
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]