PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042604t1
Common NameTCM_042604
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 284aa    MW: 32310.9 Da    PI: 9.373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042604t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-072469346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      +WT+eE + +  a + +  +   +W ++a++++ g+t  ++   ++ 
  Thecc1EG042604t1 24 SWTKEENKMFESALAIYDDDvpdRWFKVAAMIP-GKTVSDVMKQYRE 69
                      7*****************99*************.******9999885 PP
2Myb_DNA-binding40.85e-13124168347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Thecc1EG042604t1 124 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 168
                       8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-41870IPR009057Homeodomain-like
PROSITE profilePS512939.6692075IPR017884SANT domain
SMARTSM007173.9E-92173IPR001005SANT/Myb domain
SuperFamilySSF466895.16E-122378IPR009057Homeodomain-like
CDDcd001673.50E-82470No hitNo description
PfamPF002491.2E-62469IPR001005SANT/Myb domain
PROSITE profilePS5129419.883117173IPR017930Myb domain
SuperFamilySSF466892.23E-15119172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-17120172IPR006447Myb domain, plants
SMARTSM007171.0E-10121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-11121173IPR009057Homeodomain-like
PfamPF002492.3E-10124168IPR001005SANT/Myb domain
CDDcd001671.22E-8124168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
METLFATSFM SNSDWFDQES NSTSWTKEEN KMFESALAIY DDDVPDRWFK VAAMIPGKTV  60
SDVMKQYREL EEDVFKIEAG RFPMPGYCSS SFTLELVDNR DFDAYRKRST GTRGPDHERK  120
KGVPWTEEEH RRFLMGLLKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYQ RQLSGGKDKR  180
RPSIHDITTV NLTNTTFSDN HKPPSVNHSN VLALQQKLAS MPKVGNNWNH PNDGSAMAFN  240
STHGNWFTSS QYQTASNGLR LQGQNLYGSA YHGAHIKPQS SVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15251001186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009093.20.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H77e-95DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061FLV90.0A0A061FLV9_THECC; Duplicated homeodomain-like superfamily protein
STRINGEOY179030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-101MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]