PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042515t1 | ||||||||
Common Name | TCM_042515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 17135.8 Da PI: 10.4144 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.6 | 1.4e-15 | 5 | 99 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+l d+ ++rl++p ++++++ +k s+ +++ede+g+ W +k+++ r + ++ v+ +GW +Fv+ L+ gD v F+ d + e+ +++ Thecc1EG042515t1 5 FSKQL--TDTDLKKRLSIPTQCLNHFRFDKCHSTSVQVEDENGKAWHFKCRVrREGYQKPVFCEGWLKFVRYTSLRPGDRVEFYKDTKAEGLYRI 97 77888..56666678********88887888999****************88555555699999********************55445554555 PP EE CS B3 95 kv 96 +v Thecc1EG042515t1 98 QV 99 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-19 | 2 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-17 | 3 | 99 | No hit | No description |
PROSITE profile | PS50863 | 10.348 | 3 | 103 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.33E-15 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0013 | 5 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-13 | 5 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MEKIFSKQLT DTDLKKRLSI PTQCLNHFRF DKCHSTSVQV EDENGKAWHF KCRVRREGYQ 60 KPVFCEGWLK FVRYTSLRPG DRVEFYKDTK AEGLYRIQVQ RRVKLLGKEF WANLRPFEKR 120 INFEERTEVA AKEEKSKRKL SI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021296038.1 | 1e-57 | B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A061FL35 | 1e-100 | A0A061FL35_THECC; Uncharacterized protein | ||||
STRING | EOY17796 | 1e-101 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16950 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042515t1 |
Entrez Gene | 18585869 |
Publications ? help Back to Top | |||
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