PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042511t1 | ||||||||
Common Name | TCM_042511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 136aa MW: 16226.4 Da PI: 9.486 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 8.9e-17 | 5 | 99 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+l d+ ++rl++p ++++++ +k s+ +++ede+g+ W++k+++ r + ++ v+ +GW +Fv+ +L+ gD v F+ d + e+ +++ Thecc1EG042511t1 5 FSKQL--TDTDLKKRLSIPTQCLNHFRFDKGHSTSVQVEDENGKAWQFKCRVrREGYQKPVFCEGWLKFVRYTNLRPGDRVEFYKDTEAEGLYRI 97 77888..56666678********88888889999****************88555555699999********************66555555666 PP EE CS B3 95 kv 96 +v Thecc1EG042511t1 98 QV 99 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-20 | 2 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.785 | 3 | 103 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-16 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.48E-19 | 4 | 99 | No hit | No description |
Pfam | PF02362 | 2.3E-14 | 5 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-5 | 5 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
METMFSKQLT DTDLKKRLSI PTQCLNHFRF DKGHSTSVQV EDENGKAWQF KCRVRREGYQ 60 KPVFCEGWLK FVRYTNLRPG DRVEFYKDTE AEGLYRIQVQ RRVKLLGKEF WANLRPDEQR 120 INFEERTEAA AKEEK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021296038.1 | 5e-59 | B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A061FM90 | 4e-96 | A0A061FM90_THECC; Uncharacterized protein | ||||
STRING | EOY17792 | 6e-97 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16950 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 5e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042511t1 |
Entrez Gene | 18585865 |
Publications ? help Back to Top | |||
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