PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042489t1
Common NameTCM_042489
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 793aa    MW: 86482.5 Da    PI: 7.7491
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042489t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.2e-08379399526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ G C+ Gd C +aHg
  Thecc1EG042489t1 379 PCPEFRK-GACPKGDACEYAHG 399
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.0E-15178282IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-14178258IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0019180210IPR002110Ankyrin repeat
PROSITE profilePS5029716.122180289IPR020683Ankyrin repeat-containing domain
PfamPF127965.7E-8180248IPR020683Ankyrin repeat-containing domain
CDDcd002049.29E-14182288No hitNo description
SMARTSM002480.0033215247IPR002110Ankyrin repeat
PROSITE profilePS5008811.381215250IPR002110Ankyrin repeat
SMARTSM003569.2E-6374400IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638374401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5379400IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5379399IPR000571Zinc finger, CCCH-type
SMARTSM0035667409432IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.047409433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MADQYGVSNL MIWLPFAFAF HYKFQFHLFL LVKREGKKSH TFLPSSSPKP ERPYLKSHQL  60
APLSPQTIAL HTQTLLPRFQ RTTFYLLFSL FSSSETAYRA CWGMCSGSKS ELVPSSIIME  120
GELHEPKAGA ALCKCSVLLE LAASDDLVAF KSEVEEKGLD LGEASFWYGR RIGSRKMGFE  180
ERTPLTIAAM FGSVDVLKYI IGSGKIDVNR ACGTDGVTAL HCAIAGGANS SAKIVKLLLD  240
ASADANCVDA NGNKPVDLIV PALKSLSTSR RKVIELLLKG DNIVGVSDHV LNPEEEESEQ  300
IVLPQLLKEG PEKKEYPVDV SLPDINNGVY GTDEFRMYTF KVKPCSRAYS HDWTECPFVH  360
PGENARRRDP RKYPYSCVPC PEFRKGACPK GDACEYAHGV FESWLHPAQY RTRLCKDEIG  420
CTRKVCFFAH KPEELRPVYA STGSAMPSPR SAAVNAVDMA TLSPLALGSS SLPLPSTSTP  480
PMSPLAASSS PKAGGLWQNK INLTPPVLQL PGSRLKTAFS ARDLDLEMEL LGLENHASQL  540
QQQQLMDEIS SLSSPSCWSK EYSRLGDLKP TNLDDAFGSL DPSLLSPLKG LSVNSATPSQ  600
LQSPTGLQIR QNLHQLRASY PTNVSSSPVR KPSAFGFDSA AAVAAAVMNS RSSAFAKRSQ  660
SFVDRGALTT RAGLTAPANS ATMMSSNISD WSSPDGKLDW GIQGDELNKL RKSASFGFRN  720
NNPATTASID MMPSNFDEPD VSWVNTLVKD VTPVGGGLQQ RQQRYSGLGK GVRETLPPWV  780
EQMYIEQEQM VA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984800.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A061FL100.0A0A061FL10_THECC; Zinc finger family protein
STRINGEOY177610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]