PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042475t1 | ||||||||
Common Name | TCM_042475 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28535.4 Da PI: 8.4942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.5 | 1.3e-14 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN ++ Lr+l+Pk+ K++Ka+ L A+e++k+L Thecc1EG042475t1 69 KSHSQAEKRRRDRINAQLAALRKLIPKS-----DKMDKAALLGSAIEHVKDL 115 68*************************8.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.193 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-16 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-12 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-14 | 69 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-11 | 69 | 118 | No hit | No description |
SMART | SM00353 | 1.5E-12 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.95E-5 | 164 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MENCYLSSWP EGENWAEFNA TPSNESSFTV PLPIEPRFSA SSSVQCQGFP SWVVPIEGVA 60 EDRATVVSKS HSQAEKRRRD RINAQLAALR KLIPKSDKMD KAALLGSAIE HVKDLKRKAT 120 EVSKAFTIPT EVDEVTVDCD LPENISPPTN PRQTKDNKIF IRASVCCDDR PEVFAELIRV 180 LKGLRLSTVK ADISSVGGRM RSNLILCNDD SEDQGVSPST LKQSLNVVLS RIASSSAGSN 240 CRIRSKRQRL FLPSQFTQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007008919.1 | 0.0 | PREDICTED: transcription factor bHLH51 | ||||
TrEMBL | A0A061FT34 | 0.0 | A0A061FT34_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative | ||||
STRING | EOY17729 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042475t1 |
Entrez Gene | 18585828 |
Publications ? help Back to Top | |||
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