PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042474t1 | ||||||||
Common Name | TCM_042474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 26196.2 Da PI: 7.185 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 3e-18 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw + Thecc1EG042474t1 9 KGSWSPQEDANLIRLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 54 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++a++ +G++ W+tIar ++ gRt++ +k++w++ Thecc1EG042474t1 63 PFTPAEDAVIIRAHAAHGNK-WATIARQLP-GRTDNAVKNHWNST 105 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.573 | 4 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-30 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 8 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 9 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-14 | 11 | 53 | No hit | No description |
PROSITE profile | PS51294 | 25.689 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-14 | 63 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.48E-11 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MIKGGDRVKG SWSPQEDANL IRLVEQHGPR NWSMISSGIP GRSGKSCRLR WCNQLSPDVQ 60 HRPFTPAEDA VIIRAHAAHG NKWATIARQL PGRTDNAVKN HWNSTLRRKR AAELSSGSSE 120 SNNSAVKRWS SQDASESDSG NKRQCLRVEV HENVEFVGPK TLLTLSPPGE SVVSGHMEEK 180 VEDEEEEEVV KRDEEGGGRG GGGGGEEEKR RVEMKETCLL TIMQRMIKEE FVAFNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-37 | 8 | 109 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 204 | GGRGGGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007008918.1 | 1e-173 | PREDICTED: transcriptional activator Myb isoform X2 | ||||
TrEMBL | A0A061FLG6 | 1e-172 | A0A061FLG6_THECC; Myb domain protein 73 | ||||
STRING | EOY17728 | 1e-173 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-54 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042474t1 |
Entrez Gene | 18585827 |
Publications ? help Back to Top | |||
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