PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042466t1 | ||||||||
Common Name | TCM_042466 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19248 Da PI: 8.114 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.7 | 1.3e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+re++++sl+yeAear+rdPvyG++g i lq+++ +l+++ Thecc1EG042466t1 11 SCAACKLLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQHD 103 6******************************************************************************************** PP DUF260 94 lallkee 100 lal++e+ Thecc1EG042466t1 104 LALARER 110 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.595 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-40 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MRSQEPRSRA SCAACKLLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP 60 EEQREETVNS LAYEAEARLR DPVYGCIGAI ALLQRKMIEL QHDLALARER LARYAATTSS 120 AIISSDRVSM GPFGEFQVPA ASCGGFIDSF SLNSFEVNQD AHMYDFSQIP YV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-47 | 6 | 125 | 6 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-47 | 6 | 125 | 6 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007008910.1 | 1e-125 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 6e-67 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A061FK88 | 1e-124 | A0A061FK88_THECC; LOB domain-containing protein, putative | ||||
STRING | EOY17720 | 1e-125 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 3e-61 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042466t1 |
Entrez Gene | 18585819 |
Publications ? help Back to Top | |||
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