PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042463t1

Common Name

TCM_042463

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 383aa MW: 42354.8 Da PI: 8.3389

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042463t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	69	122	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Thecc1EG042463t1 69 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 122 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-30	65	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.853	65	125	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-15	66	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-23	69	124	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-9	70	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MMASDSIEDS ETSQDNNNKE GCSEDEEEEV NKSNSKAANG ESSSNSSIEE NGKKHASGSV 60 RQYNRSKTPR LRWTPDLHLC FVHAVERLGG QDRATPKLVL QLMNIKGLSI AHVKSHLQMY 120 RSKKIDDPNQ AMTEQGLLFE GGDHPTYKLS HLPMLHSFDN QRPSSSFRYG DVSWRGNDQK 180 VYGSHRGGSA LALDIATKGL YTSVTERLFG SYHNNSLGIS SPMADSCVRG KAASGRRTHQ 240 TLEEVQSLPG SWQTQTRPSR LGPITFTAQF QERGTDQTRC LSSINNSKQN SWRMTQEAQD 300 RLKRKTSASN HDLDLKLSLK MTPPNINDDD ESERDSLERF AGSLSLSLSS PSSSSKLSSL 360 KEGNTDGRKH SRTMASTLDL TL*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MMASDSIEDS ETSQDNNNKE GCSEDEEEEV NKSNSKAANG ESSSNSSIEE NGKKHASGSV  60
RQYNRSKTPR LRWTPDLHLC FVHAVERLGG QDRATPKLVL QLMNIKGLSI AHVKSHLQMY  120
RSKKIDDPNQ AMTEQGLLFE GGDHPTYKLS HLPMLHSFDN QRPSSSFRYG DVSWRGNDQK  180
VYGSHRGGSA LALDIATKGL YTSVTERLFG SYHNNSLGIS SPMADSCVRG KAASGRRTHQ  240
TLEEVQSLPG SWQTQTRPSR LGPITFTAQF QERGTDQTRC LSSINNSKQN SWRMTQEAQD  300
RLKRKTSASN HDLDLKLSLK MTPPNINDDD ESERDSLERF AGSLSLSLSS PSSSSKLSSL  360
KEGNTDGRKH SRTMASTLDL TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00301	DAP	Transfer from AT2G40260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007008903.2	0.0	PREDICTED: two-component response regulator ARR14
TrEMBL	A0A061FLF6	0.0	A0A061FLF6_THECC; Myb-like HTH transcriptional regulator family protein, putative
STRING	EOY17713	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9359	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042463t1
Entrez Gene	18585816

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]