PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042366t2

Common Name

TCM_042366

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 431aa MW: 47418.9 Da PI: 5.7438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042366t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.5e-13	225	272	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N+++ Lr ++P++ K + a+i+ A++YIk+L Thecc1EG042366t2 225 TTKHFATERERRVHLNDKYKALRNMVPNP-----SKTDRASIVGDAINYIKEL 272 579***********************9.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.383	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-16	223	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-11	224	276	No hit	No description
Pfam	PF00010	1.6E-10	226	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-14	226	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-10	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0052543	Biological Process	callose deposition in cell wall
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MKVYEDSGCF DPNSMTDCQA LMGGLAGGIS TNSQNSLEDN LNLSSYNNHQ HEDASAAAAA 60 VEMEIQQHYM LDNNTTNNNN TTLLIPQLTQ ELSYDQSNWD ADQQSFNMVP SSSSPEAAYP 120 ATPDLLNLFH LPRCSFLPNS SISFESAPAS SVVYDPLFHL NLPPQPPVFR ELLQSLPHGY 180 TLPADDREAS GGGGLYHDGD NGILEFNRGI SMAGHGKGRN RAGKTTKHFA TERERRVHLN 240 DKYKALRNMV PNPSKTDRAS IVGDAINYIK ELVRTVNELK LLVEKKRCGQ GRSKRLKTED 300 AGSAADAGDV ECKPLGDPDQ CYNSSLRSSW LQRKSKDTEV DVRIIDDEVT IKLVQRKKIN 360 CLLFVSRLLD ELQLDLHHVA GGHVGDYYSF LFNTKIYEGS SVYASAIANK LIEGVDRQYA 420 AAPPTSSTCL *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MKVYEDSGCF DPNSMTDCQA LMGGLAGGIS TNSQNSLEDN LNLSSYNNHQ HEDASAAAAA  60
VEMEIQQHYM LDNNTTNNNN TTLLIPQLTQ ELSYDQSNWD ADQQSFNMVP SSSSPEAAYP  120
ATPDLLNLFH LPRCSFLPNS SISFESAPAS SVVYDPLFHL NLPPQPPVFR ELLQSLPHGY  180
TLPADDREAS GGGGLYHDGD NGILEFNRGI SMAGHGKGRN RAGKTTKHFA TERERRVHLN  240
DKYKALRNMV PNPSKTDRAS IVGDAINYIK ELVRTVNELK LLVEKKRCGQ GRSKRLKTED  300
AGSAADAGDV ECKPLGDPDQ CYNSSLRSSW LQRKSKDTEV DVRIIDDEVT IKLVQRKKIN  360
CLLFVSRLLD ELQLDLHHVA GGHVGDYYSF LFNTKIYEGS SVYASAIANK LIEGVDRQYA  420
AAPPTSSTCL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007008755.2	0.0	PREDICTED: transcription factor bHLH91
Refseq	XP_007008756.2	0.0	PREDICTED: transcription factor bHLH91
Swissprot	Q8GX46	1e-115	BH091_ARATH; Transcription factor bHLH91
TrEMBL	A0A061FKG9	0.0	A0A061FKG9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	EOY17565	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-104	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042366t2
Entrez Gene	18585728

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]