PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042362t7

Common Name

TCM_042362

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 548aa MW: 59819.3 Da PI: 7.2483

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042362t7	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1.1e-08	246	267	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +far G+Ck G++C+F+Hg Thecc1EG042362t7 246 RPCLYFAR-GYCKNGNNCRFIHG 267 69****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.089	242	269	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-4	244	268	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	245	267	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-6	246	268	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-6	246	267	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MDGYEATRIV FSRIQNLEPE NASKIMGLLL IQDHGEKEMI RLAFGPEALV HSVVLKAKKE 60 LGLPTNSPTT PSTPSSPSPF LANNPNPVTV SRQSSSASRF LGNGAGVNLP PSLAIPTNPS 120 TSSGSSSWSA LSDLPNHDEL ISPSSGLNPS SLPFYGNGGA TDMIDEFQLQ DQLSFLNEGS 180 PNLNPKNHDL FYSQAADLSS SSAAAACGST DAMGFPSYWG SSFHRKSSSV SDILGADDPA 240 SGFGWRPCLY FARGYCKNGN NCRFIHGALG ESGSMVAGAD GAAMVGSPNK VEMMDQCHEL 300 LRSKSAQQQR LAAVSQLMGS ASFPYSPKCM NLFLQQQQND TQRAAAALMM GDDMNKFNRS 360 RLERNGFSIN GEAGMINPAS RQIYLTFPAD STFREEDVST YFRARMIYNS QDMLWRRKLE 420 EQADLQQALE LQNRRLMGLQ LLDVKKHHHH RALSCGSPIP SPTHSPNLFS QSLVLPQFHN 480 GQEAPQGTPF HSNIRINPPV ILCLVHMNQH LILLKGNDLQ SSHCRELFKP CARYICHCSR 540 ETSSQYC*

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MDGYEATRIV FSRIQNLEPE NASKIMGLLL IQDHGEKEMI RLAFGPEALV HSVVLKAKKE  60
LGLPTNSPTT PSTPSSPSPF LANNPNPVTV SRQSSSASRF LGNGAGVNLP PSLAIPTNPS  120
TSSGSSSWSA LSDLPNHDEL ISPSSGLNPS SLPFYGNGGA TDMIDEFQLQ DQLSFLNEGS  180
PNLNPKNHDL FYSQAADLSS SSAAAACGST DAMGFPSYWG SSFHRKSSSV SDILGADDPA  240
SGFGWRPCLY FARGYCKNGN NCRFIHGALG ESGSMVAGAD GAAMVGSPNK VEMMDQCHEL  300
LRSKSAQQQR LAAVSQLMGS ASFPYSPKCM NLFLQQQQND TQRAAAALMM GDDMNKFNRS  360
RLERNGFSIN GEAGMINPAS RQIYLTFPAD STFREEDVST YFRARMIYNS QDMLWRRKLE  420
EQADLQQALE LQNRRLMGLQ LLDVKKHHHH RALSCGSPIP SPTHSPNLFS QSLVLPQFHN  480
GQEAPQGTPF HSNIRINPPV ILCLVHMNQH LILLKGNDLQ SSHCRELFKP CARYICHCSR  540
ETSSQYC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017984581.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X1
TrEMBL	A0A061FJN3	0.0	A0A061FJN3_THECC; Zinc finger family protein / RNA recognition motif-containing protein isoform 7
STRING	EOY17554	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG042362t7
Entrez Gene	18585724

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]