PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042362t5
Common NameTCM_042362
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 602aa    MW: 64484.8 Da    PI: 5.8344
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042362t5genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08246267426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C +far G+Ck G++C+F+Hg
  Thecc1EG042362t5 246 RPCLYFAR-GYCKNGNNCRFIHG 267
                       69******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089242269IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4244268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5245267IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6246267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5246268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDGYEATRIV FSRIQNLEPE NASKIMGLLL IQDHGEKEMI RLAFGPEALV HSVVLKAKKE  60
LGLPTNSPTT PSTPSSPSPF LANNPNPVTV SRQSSSASRF LGNGAGVNLP PSLAIPTNPS  120
TSSGSSSWSA LSDLPNHDEL ISPSSGLNPS SLPFYGNGGA TDMIDEFQLQ DQLSFLNEGS  180
PNLNPKNHDL FYSQAADLSS SSAAAACGST DAMGFPSYWG SSFHRKSSSV SDILGADDPA  240
SGFGWRPCLY FARGYCKNGN NCRFIHGALG ESGSMVAGAD GAAMVGSPNK VEMMDQCHEL  300
LRSKSAQQQR LAAVSQLMGS ASFPYSPKCM NLFLQQQQND TQRKQQQPQV ERGEFSPCGT  360
PTGLDSRDPF DHQLGARMIY NSQDMLWRRK LEEQADLQQA LELQNRRLMG LQLLDVKKHH  420
HHRALSCGSP IPSPTHSPNL FSQSLVLPQF HNGQEAPQEN CSSPAPAISV TAPEKQAAST  480
ANAAGKESAS TEENGSGKES PHCEDGDLQE SLEHNLPDSP FASPTKASGK YLSAFSDADV  540
DKDASVSASS VNNNWVSSAL LPANNALDMA SFNSYNCQLP RYIIVTKKAP LVDSIILSLR  600
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984581.10.0PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X1
TrEMBLA0A061FKW80.0A0A061FKW8_THECC; Zinc finger family protein / RNA recognition motif-containing protein isoform 5
STRINGEOY175540.0(Theobroma cacao)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]