PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042360t2

Common Name

TCM_042360

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 246aa MW: 27235.4 Da PI: 6.2776

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042360t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.9	2.2e-08	89	131	8	50
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 rr NReA r++R++Kka ++ Lee+vk+L N++L +l+ Thecc1EG042360t2 89 RRPSGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVRKLQ 131 56667*********************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.4E-11	83	150	No hit	No description
SMART	SM00338	1.1E-6	83	149	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.7E-13	87	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.38E-7	88	132	No hit	No description
CDD	cd14686	2.50E-10	89	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDDGEVELSD HVLLSNPDSS SNLLDSTSVD LIIDEFFKNT RTCTHTHTCN PPGPDTAHTH 60 TCYHTHTQVI TSEEDDHQNN KNSSSLKPRR PSGNREAVRK YREKKKAHTA YLEEEVKKLR 120 LLNQQLVRKL QGQTILEAEV LRLRSLLVDL RAKIDGGLGV FPFQKQCNNA TILKEGDCGV 180 QSTDESIGLQ CQTDLPCFHP HAGSSSQASI GGSEKMNISW EGNCQPAIVN CQANINQMEV 240 LKDTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007008740.2	0.0	PREDICTED: basic leucine zipper 23
Refseq	XP_007008742.2	0.0	PREDICTED: basic leucine zipper 23
Swissprot	Q8GTS2	4e-54	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A061FLJ1	0.0	A0A061FLJ1_THECC; Basic-leucine zipper transcription factor family protein isoform 1
STRING	EOY17552	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51960.2	6e-25	basic leucine zipper 24

Link Out ? help Back to Top
Phytozome	Thecc1EG042360t2
Entrez Gene	18585722

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]