PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042290t2 | ||||||||
Common Name | TCM_042290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 906aa MW: 99424.5 Da PI: 6.8201 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.1 | 3.7e-19 | 333 | 432 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ + Thecc1EG042290t2 333 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID-PG 423 99**************************555556677***************9989999999***9.********************887.78 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ Thecc1EG042290t2 424 GKLVMGFRK 432 878888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.16E-20 | 330 | 433 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-30 | 330 | 435 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.46E-24 | 331 | 432 | No hit | No description |
Pfam | PF02362 | 2.6E-16 | 333 | 432 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.223 | 333 | 434 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.8E-23 | 333 | 433 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.17 | 597 | 647 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.6E-11 | 602 | 644 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 906 aa Download sequence Send to blast |
MGSKICMNSS CGTASTHEWK KGWPLRSGGF AHLCYRCGSA YEDSVYCDTF HLEESGWREC 60 RLCGKRLHCG CIASKYLLEL LDYGGVGCTS CANSSRLHSV RRIQTHGDEI PNGFSAMPMN 120 NAGSSSVESK AVGDHVDERT LAQLCKIMEA NECNLLPQSQ RGDPNASLGQ HRGEEAMCSV 180 GEVGAGFSNS MQPYVRPPNF AQTDNARPAL DIRDIHDSLS QPSLSMTLGG PSGNPNFVLP 240 FSSGLAEGKE QSKMSSSFQQ GQRSRPILPK PSKNGLATSS EVNKSMVPQA RIARPPVEGR 300 GKNHLLPRYW PRITDQELQQ LSGDLKSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP 360 PISQSEGLPL RIQDVKGKEW TFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI 420 DPGGKLVMGF RKATNSDTQE GQTSSLPNGA HSGETSNSGG IENLSTVSAY SGLFQTPKAG 480 KDPLVNSLSE HLSLADGTIS WGRGQNHGDG ANEDPVQQPA VNAEKKRTRN IGSKSKRLLM 540 HSEDALELRL TWEEAQDLLR PPPSVKPSIV TIEDHEFEEY DEPPVFGKRT IFAAQPSGGQ 600 EQWAQCDDCS KWRRLPVDVL LPPKWTCSDN VWDSSRCSCS ASEEISPKEL ENLLRVGRDL 660 KKRKILESPK LATEREPSGL DALASAAVLG DKMGDVGESS IGATTKHPRH RPGCTCIVCI 720 QPPSGKGKHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE AEISQKDNNG HKDESELNDT 780 RLDHSENEGS HSRIQAEVAE TSTGQIDLNC HPNREDLQLE EQGLNMMSLV QAAGMPMENY 840 IKQNGLPSLI SEQQGSLGSH ALSQANKENE RHLSDEEFLA SVGWEHDNRS DEGHKEPSLE 900 RNGLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-71 | 311 | 441 | 2 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 741 | 752 | KRRFKTLMLRKK |
2 | 741 | 754 | KRRFKTLMLRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017086.2 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 | ||||
Refseq | XP_017983611.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A061GYW3 | 0.0 | A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1 | ||||
STRING | EOY34705 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042290t2 |
Entrez Gene | 18591094 |