PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042189t1

Common Name

TCM_042189

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 333aa MW: 37465.3 Da PI: 8.4499

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042189t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.3e-32	45	98	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+ekAtPk +l+lm++kgL+++hvkSHLQ+YR+ Thecc1EG042189t1 45 PRLRWTPELHLCFVRAVERLGGQEKATPKLVLQLMNIKGLSIAHVKSHLQMYRS 98 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.703	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-30	41	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-15	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-10	46	97	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDEEEEGDDK RKTRNSASSS NSIVEEGEKK ATSSGVRPYV RSKMPRLRWT PELHLCFVRA 60 VERLGGQEKA TPKLVLQLMN IKGLSIAHVK SHLQMYRSKK IDDQGQVLNN KQLLGSVDNL 120 SQNLWHQSML HDQRVSSDFS DISMSAFRGN RMSEPYLTNC INSRREAGSG GSDMNEELGS 180 NVSNEVFYMN NNFIFNQRPA RKMEDLQDKL QLPDDCETIQ AQMQPILMHP SFANKWLGGR 240 GAERQRIAKR KALGGDLDLS LSLSTKLRQE VGRKTSNIEE EAADRDLSLS LYSPSKTEMY 300 SVNVNMVSKS SKLKEDDSTM NPKLSSTLDL TI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-18	46	100	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	46	100	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	46	100	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	46	100	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982443.1	0.0	PREDICTED: uncharacterized protein LOC18590995
TrEMBL	A0A061GYG6	0.0	A0A061GYG6_THECC; Myb HTH transcriptional regulator family protein, putative
STRING	EOY34561	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042189t1
Entrez Gene	18590995

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]