PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042034t1
Common NameTCM_042034
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 267aa    MW: 30039.9 Da    PI: 9.6536
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042034t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.41.4e-12197240548
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                       +r rrk+kNRe+A rsR+RK+a+  eL  kv  Le+eN +Lkke
  Thecc1EG042034t1 197 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENIKLKKE 240
                       688***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-8193249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795195240IPR004827Basic-leucine zipper domain
CDDcd147071.68E-14197234No hitNo description
Gene3DG3DSA:1.20.5.1706.6E-12197241No hitNo description
PfamPF001701.2E-10197240IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-10197242No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGIQTMGSQS NGQQSHLQPS PLVRQNSWYS LTLNEVENQL GMLGKPLGSM NLDELLDNVW  60
TTESNQSLGI DTESTSPSSS LQRQASLTLA RAFSGKTVDQ VWKEIQQGQK KRFGEEMKGQ  120
EREPTLGEMT LEDFLVQAGL FVADTSLGPT MELDSTPQSF LPQIGLSPTP LLGTLSDTSM  180
KGRKRDSQDA FEKTIERRLR RKIKNRESAA RSRARKQAYH NELVSKVSRL EEENIKLKKE  240
KKFEKIFHCE TPDPKYQLRR TSSASF*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC0087139e-40KC008713.1 Camellia sinensis bZIP transcription factor family protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016702.20.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
SwissprotQ9LES35e-70AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A061H0810.0A0A061H081_THECC; ABA-responsive element binding protein 3 isoform 1
STRINGEOY343240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167141012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.17e-61ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  3. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]