PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042012t1
Common NameTCM_042012
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 325aa    MW: 36154.2 Da    PI: 7.9931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042012t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-171462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Thecc1EG042012t1 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding40.85e-1369111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Thecc1EG042012t1  69 GEFTDEEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.788962IPR017930Myb domain
SuperFamilySSF466895.86E-2811109IPR009057Homeodomain-like
SMARTSM007174.3E-131364IPR001005SANT/Myb domain
PfamPF002496.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-251569IPR009057Homeodomain-like
CDDcd001673.50E-101662No hitNo description
PROSITE profilePS5129422.92263117IPR017930Myb domain
SMARTSM007171.9E-1267115IPR001005SANT/Myb domain
PfamPF002491.2E-1169111IPR001005SANT/Myb domain
CDDcd001674.22E-970113No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
TAQSQRKPPP FPSSHHTPPV SSQSLSSLYK DCSTSYCGTP NRSFTAFEPM SSVQSDLLNN  180
SNTTNFATNS SLIHTPQSLV SHMQYYPVKE NFLMFGSEPS CSSSDGSCSQ ISYGREIKQE  240
DMSFQGFGAS TGYEDNHKFM LDYGTNNGGA NVNQWTEKPS GYYGECSLDY DLEDVKRLIS  300
SSSTNNCCNN NNNNNNNNQT ASVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527220.0KM052722.1 Gossypium hirsutum RAX-like transcription factor RAX3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982221.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A061GYH80.0A0A061GYH8_THECC; Myb domain protein 36, putative
STRINGEOY342870.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-79myb domain protein 36
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]