PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041861t2 | ||||||||
Common Name | TCM_041861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 320aa MW: 34274 Da PI: 9.8116 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.6 | 1.2e-37 | 63 | 123 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++ Thecc1EG041861t2 63 PEVALKCPRCQSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKNK 123 56789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-34 | 47 | 118 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 66 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.152 | 67 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 69 | 105 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVFSSVPVYL DPPNWQQTNH IQQGTGSENP QLPPPPHHVG AGAGSIRPGS MADRARLAKI 60 PQPEVALKCP RCQSTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRSV PVGGGCRRNK 120 KNKSSSSKSS ASAEKQVGNS NSTSAGNIPS EITGHLPRQT PHLPFMASLQ NFSQYGLGNI 180 GLNFAGIQGQ IGATSTGASG QADMGFQIGT NSGMSSAIFS AEGTHHQQFP FFEPANGLYQ 240 FQSEGMEASS SMVGESQLLR SMSSSSRASQ TAPVKMENNQ GLNLSRQLLG VSENNQYWGG 300 NNWTDNLSGL NSSNTNHLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00281 | DAP | Transfer from AT2G28810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007016451.2 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2 isoform X2 | ||||
Swissprot | Q9ZV33 | 5e-59 | DOF22_ARATH; Dof zinc finger protein DOF2.2 | ||||
TrEMBL | A0A061GW34 | 0.0 | A0A061GW34_THECC; OBF-binding protein 3, putative isoform 2 | ||||
STRING | EOY34069 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.1 | 2e-54 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041861t2 |
Entrez Gene | 18590711 |
Publications ? help Back to Top | |||
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