PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041776t1 | ||||||||
Common Name | TCM_041776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 21502.7 Da PI: 5.6855 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Thecc1EG041776t1 27 YECTFCKRGFSNAQALGGHMNIH 49 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-5 | 24 | 53 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.1E-7 | 25 | 54 | No hit | No description |
PROSITE profile | PS50157 | 11.572 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0099 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
METDQSAPEN PDQGSSDEQR TSPARSYECT FCKRGFSNAQ ALGGHMNIHR RDKAKLKQAS 60 SPGETTQQSL DIVPKIIPSS YSPNHPSCTT VLLPIADAKS SQEIRSSPGK WPWVIPEEDD 120 ANKRDKTHVG EIRQLPLFDE KPSTTDQNYP SSQAQGGIGK GMSSSQGSSG LDQLDLELRL 180 GPEPPDSSPT MTTKKFF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021279247.1 | 1e-126 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A061H006 | 1e-143 | A0A061H006_THECC; Transcriptional regulator SUPERMAN, putative | ||||
STRING | EOY33949 | 1e-144 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6991 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 7e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041776t1 |
Entrez Gene | 18590632 |
Publications ? help Back to Top | |||
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