PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041653t1
Common NameTCM_041653
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 385aa    MW: 42577.9 Da    PI: 8.6495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041653t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039147170123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C+ Cg+ F  ++ L++H+ t H
  Thecc1EG041653t1 147 FPCTACGEIFQKPHFLEQHQATkH 170
                       89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.598147175IPR007087Zinc finger, C2H2
PROSITE patternPS000280149170IPR007087Zinc finger, C2H2
SuperFamilySSF563998.25E-14172383No hitNo description
Gene3DG3DSA:3.90.228.105.3E-6318383IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAKTIGSVFF NKFLSLFILL LHLGCFIFTA KDHHKPAKKR KASPLSLPPP SLKPNKALSS  60
TWSCLKRIFS SSKANCKNTI QTHPTATTTP TLTSARNSQQ SLVSMIIPPE THLSESPPTR  120
HEKTSGSCPE SDISSDNQFF PLRNDIFPCT ACGEIFQKPH FLEQHQATKH AVSELIDGDS  180
GKNIVRIIFK TGWTDKVKNP EIHRILKIHN SPKILARFED YRELVKAKAA RNGIGRRYER  240
CIADGNELLR FYCSTFMCDL GLNGSSSICN QQYCSICGII KSGFSPKMDG IPTLSTSWRA  300
HVAIPEDVEE EFKFMNVKRA MLVCRVVAGR VGSEGEEIDK EDGGFDSVIG RGGGSGAHTN  360
VDEEELLVFN PRAVLPCFVI VYTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016151.20.0PREDICTED: uncharacterized protein LOC18590526
RefseqXP_007016152.20.0PREDICTED: uncharacterized protein LOC18590526
TrEMBLA0A061GVB30.0A0A061GVB3_THECC; Zinc finger family protein isoform 1
STRINGEOY337710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]